InforLorV4, Main, Exploration, bibRecord, 00A185

Maximal Repetitions and Application to DNA sequences

Identifieur interne : 00A185 ( Main/Exploration ); précédent : 00A184; suivant : 00A186

Maximal Repetitions and Application to DNA sequences

Auteurs : Mathieu Giraud [France] ; Grégory Kucherov [France]

Source :

RBID : Hal:inria-00107854

Descripteurs français

mix :
- dna repeats, maximal repetitions, répétitions maximales, séquences d'adn.

Abstract

In this paper we describe an implementation of Main-Kolpakov-Kucherov algorithm \cite{KolpakovKucherovFOCS99} of linear-time search for maximal repetitions in sequences. We first present a theoretical background and sketch main components of the method. We also discuss how the method can be generalized to finding approximate repetitions. Then we discuss implementation decisions and present test examples of running the programs on real DNA data.

Url:

https://hal.inria.fr/inria-00107854

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Hal, to step Corpus: 003124
to stream Hal, to step Curation: 003124
to stream Hal, to step Checkpoint: 006211
to stream Main, to step Merge: 00A842
to stream Main, to step Curation: 00A185

Le document en format XML

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Maximal Repetitions and Application to DNA sequences

Maximal Repetitions and Application to DNA sequences

Source :

Descripteurs français

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri